requirements.txt

@@ -4,9 +4,13 @@ Flask~=2.0.1
 Flask-RESTful~=0.3.9
 requests~=2.26.0
 werkzeug
+sqlalchemy~=1.4.22
+flask_sqlalchemy~=2.5.1
 xeger~=0.3.5
 pika~=1.2.0
+psycopg2-binary
 marshmallow~=3.13.0
+marshmallow-sqlalchemy~=0.26.1
 flask-marshmallow
 py-healthcheck
 Flask-InfluxDB
@@ -14,8 +18,7 @@ tzdata
 tzlocal
 apscheduler~=3.7.0
 
-flask-redis~=0.4.0
-
 opentracing~=2.4.0
 jaeger-client
+requests-opentracing
 Flask-Opentracing

src/app.py

@@ -3,14 +3,15 @@ from flask import Flask
 from flask_restful import Api
 import sentry_sdk
 from sentry_sdk.integrations.flask import FlaskIntegration
+from sentry_sdk.integrations.sqlalchemy import SqlalchemyIntegration
 from healthcheck import HealthCheck
 
-from redis_client import redis_client
 from config import Config
+from db import db
 from marshm import ma
 from influxus import influx_db
-from resources import SampleResource
-from healthchecks import amqp_connection_status
+from resources import SampleResource, SampleParameterResource
+from healthchecks import health_database_status, amqp_connection_status
 
 import atexit
 
@@ -34,7 +35,7 @@ __version__text__ = "1"
 if Config.SENTRY_DSN:
     sentry_sdk.init(
         dsn=Config.SENTRY_DSN,
-        integrations=[FlaskIntegration()],
+        integrations=[FlaskIntegration(), SqlalchemyIntegration()],
         traces_sample_rate=0.0,
         send_default_pii=True,
         release=Config.RELEASE_ID,
@@ -47,10 +48,9 @@ app.config.from_object(Config)
 
 api = Api(app)
 health = HealthCheck()
+db.init_app(app)
 ma.init_app(app)
 
-redis_client.init_app(app)
-
 # ampq magic stuff
 magic_amqp.init_app(app)
 
@@ -68,7 +68,7 @@ if Config.ENABLE_INFLUXDB:
 def init_db():
     if Config.ENABLE_INFLUXDB:
         influx_db.database.create(Config.INFLUXDB_DATABASE)
-
+    db.create_all()
 
 # Setup tracing
 def initialize_tracer():
@@ -81,7 +81,9 @@ def initialize_tracer():
 tracing = FlaskTracing(initialize_tracer, True, app)
 
 api.add_resource(SampleResource, "/input")
+api.add_resource(SampleParameterResource, '/input/<tag>')
 
+health.add_check(health_database_status)
 health.add_check(amqp_connection_status)
 
 register_all_error_handlers(app)
@@ -90,7 +92,6 @@ app.add_url_rule("/healthz", "healthcheck", view_func=lambda: health.run())
 
 if __name__ != '__main__':
     import logging
-
     gunicorn_logger = logging.getLogger('gunicorn.error')
     app.logger.handlers = gunicorn_logger.handlers
     app.logger.setLevel(gunicorn_logger.level)

src/config.py

@@ -10,6 +10,12 @@ __copyright__ = "Copyright 2020, Birbnetes Team"
 __module_name__ = "app"
 __version__text__ = "1"
 
+_POSTGRES_HOSTNAME = os.getenv("INPUT_POSTGRES_HOSTNAME", "localhost")
+_POSTGRES_USERNAME = os.getenv("INPUT_POSTGRES_USERNAME", "input-service")
+_POSTGRES_PASSWORD = os.getenv("INPUT_POSTGRES_PASSWORD", "input-service")
+_POSTGRES_DB = os.getenv("INPUT_POSTGRES_DB", "input-service")
+_POSTGRES_OPTS = os.getenv("INPUT_POSTGRES_OPTS", "")
+
 
 class Config:
     PORT = 8080
@@ -19,10 +25,8 @@ class Config:
     RELEASE_ID = os.environ.get("RELEASE_ID", "test")
     RELEASEMODE = os.environ.get("INPUT_SERVICE_RELEASEMODE", "dev")
 
-    REDIS_URL = os.environ['CACHE_REDIS_URL']
-
-    EXCHANGE_NAME_META = os.getenv("INPUT_RABBITMQ_EXCHANGE_META", "sample-meta")
-    EXCHANGE_NAME_CACHE = os.getenv("INPUT_RABBITMQ_EXCHANGE_CACHE", "sample-cache")
+    EXCHANGE_NAME = os.getenv("INPUT_RABBITMQ_EXCHANGE", "dev")
+    RABBITMQ_QUEUE = os.getenv("INPUT_RABBITMQ_QUEUE", "wave-extract")
 
     FLASK_PIKA_PARAMS = {
         'host': os.getenv("INPUT_RABBITMQ_HOSTNAME", "localhost"),
@@ -32,6 +36,10 @@ class Config:
         'virtual_host': '/'
     }
 
+    SQLALCHEMY_DATABASE_URI = f"postgresql://{_POSTGRES_USERNAME}:{_POSTGRES_PASSWORD}@{_POSTGRES_HOSTNAME}:5432/{_POSTGRES_DB}{_POSTGRES_OPTS}"
+
+    STORAGE_HOSTNAME = os.getenv("INPUT_STORAGE_HOSTNAME", "localhost:8042")
+
     ENABLE_INFLUXDB = os.environ.get("INPUT_ENABLE_INFLUX", "true").lower() in ["true", "yes", "1"]
     INFLUXDB_HOST = os.getenv("INFLUX_HOST", "input-influx")
     INFLUXDB_PORT = os.getenv("INFLUX_PORT", "8086")

src/db.py

@@ -0,0 +1,13 @@
+#!/usr/bin/env python3
+from flask_sqlalchemy import SQLAlchemy
+
+"""
+Database api
+"""
+
+__author__ = '@tormakris'
+__copyright__ = "Copyright 2020, Birbnetes Team"
+__module_name__ = "db"
+__version__text__ = "1"
+
+db = SQLAlchemy()

src/healthchecks.py

@@ -1,4 +1,6 @@
 #!/usr/bin/env python3
+
+from db import db
 from magic_amqp import magic_amqp
 
 """
@@ -11,6 +13,17 @@ __module_name__ = "healthchecks"
 __version__text__ = "1"
 
 
+def health_database_status():
+    is_database_working = True
+    output = 'database is ok'
+    try:
+        db.session.execute('SELECT 1')
+    except Exception as e:
+        output = str(e)
+        is_database_working = False
+    return is_database_working, output
+
+
 def amqp_connection_status():
     if magic_amqp.is_healthy():
         result = True

src/magic_amqp.py

@@ -26,8 +26,8 @@ class MagicAMQP:
     def init_app(self, app: Flask):
         self.app = app
         self.app.config.setdefault('FLASK_PIKA_PARAMS', {})
-        self.app.config.setdefault('EXCHANGE_NAME_META', None)
-        self.app.config.setdefault('EXCHANGE_NAME_CACHE', None)
+        self.app.config.setdefault('EXCHANGE_NAME', None)
+        self.app.config.setdefault('RABBITMQ_QUEUE', None)
 
         self._credentials = pika.PlainCredentials(
             app.config['FLASK_PIKA_PARAMS']['username'],
@@ -46,11 +46,7 @@ class MagicAMQP:
         )
         self._pika_channel = self._pika_connection.channel()
         self._pika_channel.exchange_declare(
-            exchange=self.app.config['EXCHANGE_NAME_META'],
-            exchange_type='direct'
-        )
-        self._pika_channel.exchange_declare(
-            exchange=self.app.config['EXCHANGE_NAME_CACHE'],
+            exchange=self.app.config['EXCHANGE_NAME'],
             exchange_type='direct'
         )
 
@@ -75,7 +71,7 @@ class MagicAMQP:
             if total_time > 1:
                 self.app.logger.warning(f"Loop: Total loop took {total_time:5f} sec")
 
-    def _publish(self, exchange: str, payload=None):
+    def publish(self, payload=None):
         """
         Publish a simple json serialized message to the configured queue.
         If the connection is broken, then this call will block until the connection is restored
@@ -93,7 +89,7 @@ class MagicAMQP:
                 while True:
                     try:
                         self._pika_channel.basic_publish(
-                            exchange=exchange,
+                            exchange=self.app.config['EXCHANGE_NAME'],
                             routing_key='feature',
                             body=json.dumps(payload).encode('UTF-8')
                         )
@@ -124,12 +120,6 @@ class MagicAMQP:
                 if total_time > 0.4:
                     self.app.logger.warning(f"Publish: Total publish took {total_time:5f} sec")
 
-    def publish_cache(self, payload=None):
-        return self._publish(self.app.config['EXCHANGE_NAME_CACHE'], payload)
-
-    def publish_meta(self, payload=None):
-        return self._publish(self.app.config['EXCHANGE_NAME_META'], payload)
-
     def is_healthy(self) -> bool:
         with self._lock:
             if not self._pika_channel:

src/models.py

@@ -0,0 +1,25 @@
+#!/usr/bin/env python3
+from db import db
+from sqlalchemy.sql import func
+
+"""
+Flask Restful endpoints
+"""
+
+__author__ = '@tormakris'
+__copyright__ = "Copyright 2020, Birbnetes Team"
+__module_name__ = "models"
+__version__text__ = "1"
+
+
+class SampleMetadata(db.Model):
+    """
+    SQLAlchemy model of metadata entries
+    """
+    id = db.Column(db.Integer, primary_key=True, auto_increment=True)
+    timestamp = db.Column(db.TIMESTAMP, nullable=False, server_default=func.now())
+
+    device_id = db.Column(db.Integer, nullable=False)
+    device_date = db.Column(db.DateTime, nullable=False)
+
+    tag = db.Column(db.String(32), nullable=False, unique=True)

src/redis_client.py

@@ -1,4 +0,0 @@
-#!/usr/bin/env python3
-from flask_redis import FlaskRedis
-
-redis_client = FlaskRedis()

src/resources.py

@@ -1,14 +1,18 @@
 #!/usr/bin/env python3
-import io
+import json
+import time
 from datetime import datetime
 import tzlocal
 from xeger import Xeger
 from flask_restful import Resource
 from flask import request, current_app, abort
+import requests
 from magic_amqp import magic_amqp
+from db import db
 from influxus import influx_db
-from schemas import SampleSchema
-from redis_client import redis_client
+from models import SampleMetadata
+from schemas import SampleSchema, SampleMetadataSchema
+from requests_opentracing import SessionTracing
 import opentracing
 
 """
@@ -28,6 +32,7 @@ class SampleResource(Resource):
     """
 
     sampleschema = SampleSchema(many=False)
+    samplemetadataschema = SampleMetadataSchema(many=True)
 
     def post(self):
         """
@@ -43,13 +48,13 @@ class SampleResource(Resource):
             if 'description' not in request.form:
                 return abort(400, "no description found")
             else:
-                description_raw = request.form.get("description")
+                description = request.form.get("description")
 
             if soundfile.content_type != 'audio/wave':
                 current_app.logger.info(f"Input file was not WAV.")
                 return abort(415, 'Input file not a wave file.')
             try:
-                desc = self.sampleschema.loads(description_raw)
+                desc = self.sampleschema.loads(description)
             except Exception as e:
                 current_app.logger.exception(e)
                 return abort(417, 'Input JSON schema invalid')
@@ -61,34 +66,62 @@ class SampleResource(Resource):
                 if len(generated_tag) > 2:  # Ensure minimum length
                     break
 
-        with opentracing.tracer.start_active_span('publishMetaMessage'):
-            try:
-                magic_amqp.publish_meta(
-                    {
-                        'tag': generated_tag,
-                        'timestamp': datetime.now().isoformat(),
-                        'device_id': desc['device_id'],
-                        'device_date': desc['date'].isoformat()
-                    }
+        # Handle mega-autismo-cliento
+        soundfile_content_length = soundfile.content_length
+        if soundfile_content_length <= 0:  # BRUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUH
+            with opentracing.tracer.start_active_span(
+                    'calculateContentLength'):  # In an ideal scenario this span is missing
+                current_app.logger.debug(
+                    "The uploader did not provide content-length for the sound file... Calculating manually..."
                 )
-            except Exception as e:
-                current_app.logger.exception(e)
-                return abort(500, f"AMQP Publish error: {str(e)}")
+                # So, this is a seekable stream, so we just seek to the end
+                old_ptr = soundfile.tell()
+                soundfile.seek(0, 2)
+                # Check where is the end (= content length)
+                soundfile_content_length = soundfile.tell()
+                # Seek back to where the stream was
+                soundfile.seek(old_ptr, 0)
 
-        with opentracing.tracer.start_active_span('readSampleToMemory'):
-            buf = io.BytesIO()
-            soundfile.save(buf)
+                # It's insane, that you can not set this field in curl
 
-        with opentracing.tracer.start_active_span('putToCache'):
-            redis_client.set(generated_tag, buf.getbuffer())  # getbuffer is quick as it does not copy like getvalue
+        with opentracing.tracer.start_active_span('sqlalchemy.create'):
+            record = SampleMetadata(
+                device_id=desc['device_id'],
+                device_date=desc['date'],
+                tag=generated_tag
+            )
+            db.session.add(record)
+
+        with opentracing.tracer.start_active_span('uploadToStorageService'):
+            files = {
+                'description': (None, json.dumps({'tag': generated_tag}), 'application/json'),
+                'soundFile': (
+                    'wave.wav',
+                    soundfile,
+                    soundfile.content_type,
+                    {'Content-Length': soundfile_content_length})}
+
+            upload_started = time.time()
+            r = SessionTracing(propagate=True).post(
+                f"http://{current_app.config.get('STORAGE_HOSTNAME')}/object",
+                files=files
+            )
+            upload_time = time.time() - upload_started
+
+            if upload_time > 0.8:
+                current_app.logger.warning(f"Uploading to storage-service took {upload_time:5} sec")
+
+            if r.status_code not in [200, 201]:
+                return abort(500,
+                             f"Failed to upload sample to storage service. Upstream status: {r.status_code}: {r.text}")
+
+        with opentracing.tracer.start_active_span('sqlalchemy.commit'):
+            db.session.commit()
 
         # Announce only after the data is successfully committed
-        with opentracing.tracer.start_active_span('publishInCacheMessage'):
+        with opentracing.tracer.start_active_span('publishMessage'):
             try:
-                magic_amqp.publish_cache({
-                    'tag': generated_tag,
-                    'mime_type': soundfile.mimetype
-                })
+                magic_amqp.publish({'tag': generated_tag})
             except Exception as e:
                 current_app.logger.exception(e)
                 return abort(500, f"AMQP Publish error: {str(e)}")
@@ -112,3 +145,90 @@ class SampleResource(Resource):
                 )
 
         return {"tag": generated_tag}, 200
+
+    def get(self):
+        """
+        Get all stored items
+        :return:
+        """
+        with opentracing.tracer.start_active_span('compileQuery'):
+            query = SampleMetadata.query
+
+            ## Compile filters ##
+
+            filters = []
+            try:
+                first = int(request.args.get('first'))
+            except (ValueError, TypeError):
+                first = None
+            else:
+                filters.append(
+                    SampleMetadata.id >= first
+                )
+
+            try:
+                after = datetime.fromisoformat(request.args.get('after'))
+            except (ValueError, TypeError):
+                after = None
+            else:
+                filters.append(
+                    SampleMetadata.timestamp > after
+                )
+
+            try:
+                before = datetime.fromisoformat(request.args.get('before'))
+            except (ValueError, TypeError):
+                before = None
+            else:
+                filters.append(
+                    SampleMetadata.timestamp < before
+                )
+
+            if filters:
+                query = query.filter(db.and_(*filters))
+
+            try:
+                limit = int(request.args.get('limit'))
+            except (ValueError, TypeError):
+                limit = None
+            else:
+                query = query.limit(limit)
+
+        ## Run query ##
+        count = "count" in request.args
+        tags = {
+            "first": first,
+            "limit": limit,
+            "after": after,
+            "before": before
+        }
+
+        if count:
+            with opentracing.tracer.start_active_span('sqlalchemy.count', tags=tags):
+                rows = query.count()
+
+            return {"count": rows}, 200
+        else:
+            with opentracing.tracer.start_active_span('sqlalchemy.select', tags=tags):
+                samples = query.all()
+
+            return self.samplemetadataschema.dump(list(samples)), 200
+
+
+class SampleParameterResource(Resource):
+    """
+    Sample endpoint with parameters
+    """
+
+    samplemetadataschema = SampleMetadataSchema(many=False)
+
+    def get(self, tag: str):
+        """
+        Get a specific item
+        :param tag:
+        :return:
+        """
+        with opentracing.tracer.start_active_span('sqlalchemy.select', tags={"tag": tag}):
+            sample = SampleMetadata.query.filter_by(tag=tag).first_or_404()
+
+        return self.samplemetadataschema.dump(sample), 200

src/schemas.py

@@ -1,4 +1,7 @@
 #!/usr/bin/env python3
+from flask_marshmallow.sqla import auto_field
+
+from models import SampleMetadata
 from marshm import ma
 from marshmallow import fields
 
@@ -23,3 +26,13 @@ class SampleSchema(ma.Schema):
 
     date = fields.DateTime(required=True)
     device_id = fields.Integer(required=True)
+
+
+class SampleMetadataSchema(ma.SQLAlchemyAutoSchema):
+    """
+    Marshmallow schema generated
+    """
+    class Meta:
+        model = SampleMetadata
+        exclude = ('timestamp', 'id', 'device_date')
+    date = auto_field("device_date", dump_only=False)